Gene Validatorv2.1.5
Identify Problems with Gene Predictions
| # | Ranking | Sequence Definition | No. Hits | Length Cluster | Length Rank | Gene Merge | Duplication | Reading Frame | Main ORF | Missing/Extra Sequences | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ENA|AAC06291|AAC06291.1 Arabidopsis thaliana (thale cress) syntaxin of plants 31 | 10 | 337 [336, 355] | 20% | 0.0 | 1.0 | 10 HSPs align in frame 1 | 100% (frame 1) | 98% conserved; 5% extra; 12% missing. | ||
| 2 | ENA|AEO89880|AEO89880.1 Homo sapiens (human) NADH dehydrogenase subunit 4L | 257 | 99 [98, 99] | 100% | 0.0 | 1.0 | 257 HSPs align in frame 1 | 99% (frame 1) | 92% conserved; 1% extra; 0% missing. | ||
| 3 | ENA|AAZ66996|AAZ66996.1 Erymnochelys madagascariensis partial brain-derived neurotrophic factor | 110 | 239 [236, 253] | 39% | 0.0 | 1.0 | 110 HSPs align in frame 1 | 100% (frame 1) | 97% conserved; 0% extra; 3% missing. | ||
| 4 | ENA|AAY44250|AAY44250.1 Ramphotyphlops sp. YPM 13663 partial brain-derived neurotrophic factor | 109 | 223 [236, 253] | 22% | 0.0 | 1.0 | 109 HSPs align in frame 2 | 100% (frame 2) | 12% conserved; 18% extra; 19% missing. | ||
| 5 | ENA|ACR78454|ACR78454.1 Heliothis virescens (tobacco budworm) attacin | 10 | 208 [208, 254] | 10% (too short) | -0.1 | 1.0 | 10 HSPs align in frame 1 | 100% (frame 1) | 100% conserved; 0% extra; 15% missing. | ||
| 6 | ENA|EEF42972|EEF42972.1 Ricinus communis (castor bean) calmodulin-binding transcription activator (camta), plants, putative | 26 | 1020 [724, 1208] | 38% | -0.3 | 0.25 | 36 HSPs align in frame 1; 8 HSPs align in frame 3 | 100% (frame 1) | 76% conserved; 4% extra; 11% missing. | ||
| 7 | ENA|AAT08493|AAT08493.1 Rhineura floridana cytochrome c oxidase subunit II | 299 | 228 [227, 228] | 35% | 0.0 | 1.0 | 299 HSPs align in frame 1 | 51% (frame 1) | 84% conserved; 0% extra; 1% missing. | ||
| 8 | ENA|AAY44234|AAY44234.1 Corallus caninus partial brain-derived neurotrophic factor | 105 | 192 [236, 253] | 10% (too short) | 0.0 | 1.0 | 105 HSPs align in frame 1 | 100% (frame 1) | 89% conserved; 0% extra; 13% missing. | ||
| 9 | ENA|CAC41167|CAC41167.1 Spodoptera frugiperda (fall armyworm) hypothetical protein | 136 | 1735 [734, 1007] | 25% | -0.4 | 0.06 | 331 HSPs align in frame 1 | 100% (frame 1) | 67% conserved; 2% extra; 45% missing. | ||
| 10 | ENA|AEV14992|AEV14992.1 Xenopipo atronitens (black manakin) partial cytochrome oxidase subunit 1 | 211 | 217 [505, 541] | 2% (too short) | 0.0 | 1.0 | 211 HSPs align in frame 2 | 45% (frame -2) | 14% conserved; 6% extra; 60% missing. |